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… opportunity for JGI to work on these, as it allows us to highlight hot topics in genomics.” And it makes sense to … move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal … to (meta)genomics, and at least one of the papers they reference should be hot off the press. She tells prospective …

… characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …

… 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal … Using new sequencing technologies for producing both reference genomes and epigenomics, researchers are …

… and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched … Nature . 2008; 452: 88-92. … Clarivate/Thomson Reuters Highly Cited Researcher/The World’s Most Influential …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … Notable examples include CheckV , which assesses the quality and completeness of metagenome-assembled viral … and Data Collaboration Center (CODCC), is led by a team of highly experienced investigators from institutions including …

… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to …

… into KBase has immediate value because people can find the high-quality MAGs and use them to inform future analyses,” said … he’s interested in expanding the diversity of the reference database he’s developing called the  Microbial …

… and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11, 237 … 15, 1569–1584. Nayfach et al., 2020. CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., …

… at the Massachusetts Institute of Technology he developed a high throughput approach for isolating individual bacterial … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …

… researchers at the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The …

… is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of … with 8 billion metagenome genes from IMG (the study also references data from the JGI’s  Genomes from Earth’s … with at least 100 members.  “If you have 100 sequences, the quality of the cluster is significantly higher because it is …

… across five oceanic regions. In doing so, they found a high degree of variability in the types of microorganisms … communities around these vents survive in very hot, high-pressure and chemically-rich ecosystems. This means … datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published …