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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … undergraduate students and eight graduate students, hosted by 18 JGI staff. One of the mentors, postdoc Yumary Vasquez, …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… environmental processes. The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through their diverse genomic capabilities. Summary In a project supported by the JGI Community Science Program, …
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JGI at the AGU Fall Meeting
… context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” … KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth System …
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A Plant Root Atlas for Tracking Developmental Trajectories
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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JGI on the 2020 Highly Cited Researchers List
… demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… a wide range of industrial applications. The team was led by researchers at two U.S. Department of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … in the terrestrial ecosystems. Unfortunately, neither paper was able to resolve the latter question, despite of …
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … each transcription factor of interest. Nature Methods paper coauthor Lee did the initial development of a … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP … et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for … 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, …
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JGI Announces 2026 Functional Genomics Recipients
… Ritu Singh, Jiaqi Tan, Claire Willing Each year, the Joint Genome Institute (JGI) accepts proposals for … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI's biodesign and omics … rare earth elements and other high-value resources. Enabled by the capabilities and expertise within the JGI, these …
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