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… trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the Computing Sciences … all of this information. The JGI aims to create pipelines, tools and other standardized data resources that the global …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the … by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …

… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …

… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …

… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In … Communications article , the team used publicly available data, approximately half of which was generated by the JGI, …

… Using the IMG/M data portal, researchers have identified a virus protein … soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint … JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a community resource for …

… sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What types of analysis …

… of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …

… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — … loses this protein, energy metabolism is disrupted. These data create a multilayered understanding of this Domain …

… with resequencing of 1,984 cultivars and landraces, these data capture the diversity of this crop across geographic … for future analysis and discovery. “We're building the data sets that are needed to build the algorithms of the …

… his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing … The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly available at the …

… By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … Virophage data on IMG/M data portal …