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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the … genes. The data from that study is now used across California State University campuses for biotechnology education as part of a …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … core software engineer on the early KBase team at Lawrence Berkeley National Laboratory. Mike earned his PhD in … X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or … Simon Roux (Cross-field)  Jeremy Schmutz (Cross-field)  Susannah Tringe (Microbiology)  Tanja Woyke (Biology and …
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Ian Wheeldon
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Streamlining Regulon Identification in Bacteria
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Transcription … regulation is critical to ensuring genes vital for growth and survival across various environments are … scientist Hiroshi Otani. Both are members of the JGI’s Secondary Metabolite Science Program, which Mouncey leads. …
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Soil virus offers insight into maintaining microorganisms
… to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 … of the most commonly found carbon biopolymers in nature, second only to cellulose.  Chitin is also a common food …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … an Adjunct Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Professor at …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), through the JGI …
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here … of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California (UC) San Diego, being on the UEC is an opportunity to help …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory (Berkeley Lab) describes it, … JGI users — both primary, data-generating users, as well as secondary, data-downloading users — have access to …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI … and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt Escobar (California State San Marcos) about how the Adopt-A-Genome project got …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), with assistance …
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