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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake … In this episode: a look at the supercomputing that stitches together large datasets with the assembler program … capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  …
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work … of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, …
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The Case for Conservation
… help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . … the multiple advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; microMORPH Cross-Disciplinary Training Grant, …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this cohort and …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger … single protein. Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National …
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Atif Shahab
… Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data … This platform streamlines project management, laboratory information tracking, and enables efficient analysis … Information Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned …
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at … Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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Tina Clarke
… the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined … Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions and appropriate actions on diverse HR …
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MycoCosm Tutorial
… multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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