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Gut Fungi: Unexpected Source of Novel Chemicals
… herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Honey Bee Gut Microbiota Divvy Up Dinner
… bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are … the remixing of genes in the next generation of flowering vegetation. In return for their services, bees eat plant … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Doubling Down on Known Protein Families
… exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … at least double.  “As we keep on adding more samples, we’re getting more protein families,” Kyrpides said. “In a few …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the … ( Nature Biotechnology , 2024), and iPHoP , an integrated machine learning framework to maximize host prediction for …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via … mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical compound ethene. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Leadership
This group is responsible for institutional strategic planning, talent management, and convening of advisory committees to guide the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve … samples — so this episode is a look at how researchers get these specialized snapshots of a freshwater ecosystem. …
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A Plantiful Future: Xiaohan Yang
… a renewable energy future? Can they help lock away more carbon? Xiaohan Yang, a scientist at Oak Ridge National Laboratory, believes they can. And, what’s more, that using gene … mix traits of different plant species will help us get there. …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … 21, e3002083 Roux et al., 2021. Ecology and molecular targets of hypermutation in the global microbiome. Nature …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and …
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