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2024 Progress Report
… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … number of users with a record output of products, making data easier to access and use, and by investing in the …
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Neha Varghese
… analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for … through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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Dispatches From JGI Interns
… describe their deep dives into genomics, computational tools, and big data.  …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … team of engineers and scientists builds and operates the data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for …
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A Community Resource for Secondary Metabolite Researchers
… gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … Collaboratory (SMC) has launched as an interactive public database for the research community. With more than 13 … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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Simon Roux
… include the development of novel computational tools to identify virus sequences, the design of new … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. …
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A Grass Model to Help Improve Giant Miscanthus
… genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … of the tetraploid M. sacchariflorus whole genome sequence data was funded by the BBSRC Core Strategic Programme in … Datasets …
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Natural Prodcast Episode 8: Eric Schmidt
… learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …
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