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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint … highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with … cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint Genome …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome … EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from … published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a … improving connectivity across the DOE data ecosystem, building and harnessing partnerships, enhancing the JGI’s …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding … Collaboration Center (CODCC), is led by a team of highly experienced investigators from institutions including the …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … Q(uestion) 1: Can researchers perform suggested treatments in the …  Who is eligible to submit a FICUS proposal? A:  We work with people from all around the world and at different …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … genome using samples collected at these gardens. Building off this work, researchers at three DOE Bioenergy … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced …
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