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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate …
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IMG/M: a data management and analysis system for metagenomes
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Webinar: SIP technologies at EMSL and JGI
… and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL … is on the roadmap and will be piloted in the near future. 5. Q: How well-suited is the LA-IRMS for tracking N15? The … C13 and sort of the isotope of proteomics, what about doing this with metabolites at EMSL? A:  The answer to …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … and Development Program of Berkeley Lab, among other organizations. …
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Charting Progress toward Professional Goals
… programs – some managed by the Lab – to learn more about their experiences. Jehan Jacobs participated in the … Their summer experiences allowed them to learn more about communicating science, utilize the insights they … it? Jehan Jacobs : I have a poster session actually, like just a couple days from now. So I've been thinking about …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new … of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go here to view the full … JGI offers, as well as proposal review procedures and the organization of the JGI Annual Genomics of Energy & …
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JGI Announces 2023 Community Science Program Awardees
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … nutrient cycling, and biogeochemistry. You can learn more about this year’s recipients on our Twitter. Samples were … and biofuels, biomaterials and bioproducts. Learn more about our proposals, including how to apply, here on our …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … its greenhouse gas emissions in half, relative to its 2015 baseline emissions.  Reaching that goal will mean slashing … Members from across Berkeley Lab gathered to learn more about planting and tending these shoots of their own. The …
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IMG/M 4 version of the integrated metagenome comparative analysis system
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term … the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and unknown. The challenge remains to learn more about what microbes are present in any given … the function-driven, single-cell screen can uncover more about cellulose-degrading microbes. The new technique is …
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