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… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn …

… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …

… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … This study was supported by a PhD scholarship from the China Scholarship … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …

… Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …

… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms …

… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … is open year-round, but proposals submitted by September 21, 2020, will be included in the next review. Q&A from the …

… The United States  is the world’s leading soybean producer , and soybeans … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien …

… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …

… The BioSANS instrument is at the Center for Structural Molecular … University in St. Louis on “Solar Energy Conversion in Cyanobacterial Membranes” Marcus Foston, Washington University in … on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       …

… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …

… This webinar focused on how the JGI employs single-molecule, long-read … to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only …