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… Interns contributed to a number of projects, from refining lab protocols at the bench to … a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray Maeda Mentors: Jonelle Basso, Heejung …

… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar …

… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only …

… Summer 2025 marked the second year of Alabama A&M University … mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …

… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic …

… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … co-localization of JGI and KBase at the Integrative Genomics Building (IGB). Said Michael Brandt of Ray, “You …

… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies … ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read …

… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. … for user science and projects through implementation of advanced analysis pipelines and tools as well as …

… to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological and …

… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … studying the microbial communities in Antarctic lakes, some of which have salinities 10 times that of seawater. To shed … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …

… Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and … Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community Science Program Large Scale call. This … Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale …