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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … ) was conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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From Textbook to Real World Applications
… When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and Jan-Fang Cheng in the …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … including acting as antibiotics. But zealexins are almost completely limited to maize. By deciphering the zealexin … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … metabolic changes they’ve undergone. The Impact The number of microbes in, on, and around the planet is an astronomical … between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living opals” because of the strange, beautiful properties of their silica shells. But what genes are responsible for …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … the facilities offer a breadth of characterization and analytical power, researchers are not expected to be expert …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, Douglas fir and Engelmann … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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