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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, … P. vulgaris on Phytozome … Plant Datasets …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI … The Chief Informatics Officer provides advice and strategic direction for …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for … or activate certain genes and assess how these edits affect functionality.  CRAGE allows for the transplanting of these …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the … This work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, … This work was funded by the US-National Science Foundation grants …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … Work at Lawrence Livermore National Laboratory was conducted under …
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