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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas … event (0.14 Mya) with a maternal  B. stacei parent. The analysis also revealed that these two  B. hybridum types …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes
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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
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Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil
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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
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Soil virus offers insight into maintaining microorganisms
… AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … data portal. The IMG suite is a community resource for comparative analysis and annotation of all publicly … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers at two U.S. Department of Energy national user facilities – the DOE Joint Genome … of Illinois Urbana-Champaign, conducted technoeconomic analysis to determine if this technology might have value in …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: … Please review our FAQ in advance of contacting the PMO office.  …
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