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Matt Blow
… epigenome and other functional genomics datasets generated by JGI user science projects. … BS in Biochemistry and … bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living Growth … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons … As a part of his internship, he was regularly tasked by his mentor to present his project work and navigate a … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Igor Grigoriev
CA … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson … Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation of active genes in fungi.  Nature Genet.  … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of … zinc. Co-expression analysis as well as laboratory culture experiments showed that those zinc-binding proteins … CSP projects publicly available at the PhycoCosm portal . Byline: Menaka Wilhelm   … The U.S. Department of Energy …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive … and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or … office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … at the French National Research Institute for Agriculture, Food and Environment (INRAE) and the U.S. …
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Applying Promiscuous RiPP Enzymes to Peptide Backbone N‑Methylation Chemistry
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences … sequencing or DAP-seq. The technology was developed by Ronan O’Malley , who leads the Sequencing Technologies … from either genomic DNA or complementary DNA (cDNA), reducing the amount of time it takes to produce a dataset …
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