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JGI Welcomes New UEC Members
… The JGI User Executive Committee (UEC) represents the JGI user community and is … results are in and JGI extends a warm welcome to the three new UEC members. They are: Kathleen Greenham of the …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … to long-read metagenome assemblies by JGI and uploaded to IMG? A:  Depending on the project setup, we can include as …
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review procedures and the …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  … Our homepage video includes external footage from: University of Delaware; Laura.Selbmann©PNRA. All the …
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …
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JGI announces second round of 2023 New Investigator awardees
… From left to right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin … not led any previously-accepted proposals — through the New Investigator call under our Community Science Program .  …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal contained …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration … of Illinois Urbana-Champaign, conducted technoeconomic analysis to determine if this technology might have value in … was supported by laboratory-directed research and development (LDRD). The work conducted by the U.S. Department of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI … the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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