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JGI@25: Building a Better Bean
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … of the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a … a 473-million basepair genome of the common bean, identifying genes related to disease-resistance, flowering time, …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research … Day on April 25. Since both DNA and the Earth are close to our JGI hearts, we’re featuring some scintillating genomic … across the globe.  Karolina and I kicked off our conversation with a quick recap of how plants, in …
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Applying Viral Genomics Expertise to Understanding the Human Virome
Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … to easily analyze viral genomes. This includes (i) classifying viruses into groups that can be compared across …
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JGI User Executive Committee Expands
… environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback on …
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Three Join the JGI User Executive Committee
… in crops. He has been a PI or Co-PI on five user projects with the JGI, as well as served on review panels for the JGI Community Science Program (CSP) proposals. He  brings experience representative of the … will help the JGI shape its programs, capabilities, and resources to best meet the broad base of user community needs. …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing … Rubel, O., Prabhat, Mahoney, M., & Bowen, B. (2015). Identifying important ions and positions in mass spectrometry … with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass Spectrometry, 21, …
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Computationally Classifying Fungal Lifestyles
… methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific … scientists want to take a further look into identifying genes related to biotic stresses to better understand …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the … of sorts at the Lab. “This project represents part of our long term efforts to contribute towards a diverse … and scientific community (working with the JGI) as well as our efforts in workforce development. We have a number of …
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Ian Blaby
… oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide … and overlap with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., High-resolution … a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of nitrogen …
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Programs & Platform Leads
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … has been instrumental in establishing larger-scale research projects in our group. It’s enabled us to accelerate gene, … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to …
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