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… and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … what has typically been associated with viruses, while the genomes of large viruses may be only 10 times larger. And … to take a more global look at giant viruses by capturing genomes of uncultivated giant viruses from environmental …

… the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for …

Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … Schmutz and his team assembled and annotated the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of …

… , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …

Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm … Institute, who works extensively on ASR. “Having the genomes of a crop like soybean ensures that what we bring to … growers.”   … Glycine max on Phytozome … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … Fungal Datasets …

… and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched … et al (2014) MycoCosm portal: gearing up for 1000 fungal genomes.  Nucleic Acids Res. 42(1):D699-704. Read B et al. …

Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild  Miscanthus lineages to better …

… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ … method called Multiple Displacement Amplification, and most genomes that were acquired through it were usually only …

… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … The group performs custom analysis and develops automated pipelines for analysis of resequencing, transcriptome, … Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. …

To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone …

… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … of Vienna  reported recovering draft metagenome-assembled genomes for seven novel species of Acidobacteria through an …