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… The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …

… Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … Olmstead worked with postdoctoral fellow Ben Cole on a project involving bacteria in Arabidopsis plant roots. At …

… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] … the Principal Investigator of the corresponding genome projects as they may coordinate users in the community …

… A new approach for improving functional annotation in fungal genomes. The Science In a … production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE … at the JGI as part of a 2014 Community Science Program project. The results revealed that at each of eight genes, …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … find me. And really it was my third grade science fair project where I first looked into a microscope and just fell … the guidance of Dr. Barry O’Keefe – they have a massive project ongoing where they are pre-fractionating this mega …

… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have begun the …

… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … factors bind in the genome. A key aspect of the project is understanding what TFs and regulatory networks …

… Edward Lu and mentor Miguel Romero Sean Saki and mentors  Zhong Wang and Bryce Foster Sivagunalan Thamilarasan and … enough experience to make really good contributions to the project. Also my area of expertise over the past couple … I think that my skills were very complimentary to the project and I learned a lot and gonna take a lot away from …

… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations …

… Trained on environmental data, a new JGI tool more accurately … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … environments, the long-term ecological Harvard Forest project, large datasets from soil microbiome studies …

… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The software was created … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …

… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …