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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with … science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that point to the potential of seed oils as …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial … its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a more global …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and well-thought-out questions. We are looking for projects that can’t easily be done at a core facility, but …
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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NeLLi — Symposium on New Lineages of Life
… “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis. Further, … Program Tanja Woyke, Microbial Program Robert Bowers,  User Project Coordination Rekha Seshadri,  Functional Annotation …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … four genes, including one with no prior known function. The project’s success demonstrates how to sharpen the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… about natural products and the science and scientists of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section on … in partnering with us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … same mistakes,” he said. “Although in my specific case the projects are different for the two proposals, I can see the …
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