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… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been 10 … could be useful for industrial biofuel production, and multicellular development. “DAP-Seq is the main source of …

Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that …

… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … orientation to JGI systems to Investigators Preparation of formal Statement of Work (project roadmap) Users must …

… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …

… beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was …

Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines …

… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support … to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities …

… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications … of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( …

… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized … structure of the protein related to its function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence …

Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … — so researchers can easily explore the evolutionary and functional relationships among the different algae. …

… step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …

… ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … involved in lipid metabolism.  “There’s still a lot of thinking that truck fuel and airplane fuel and things like … up with him recently. “So, there’s going to be a need for these biofuels and that’s a good niche market for …