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Synthetic Biology Informatics Group
… gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast … For further details, please reach out to the Group Lead …
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Metabolomics Technology Group
… lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of … For further details, please reach out to the Group Lead …
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Doubling Down on Known Protein Families
… exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial communities, scientists have historically been … DNA editing enzymes.” Leveraging Protein Families in a New Way The discovery of new protein families had started to …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Pictured from left: [Top row]: Romy Chakraborty, Dawn Chiniquy, Anne Glaesener, … Stephanie Porter, Claire Remacle, Christian Rinke;  [Bottom row]: John Sedbrook, Viktoria Steck, Ning Sun, Olena … Office of Science user facilities. They provide researchers leading approved proposals with free access to their …
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JGI Hosts GPU Hackathon in May
… (JGI), a DOE Office of Science user facility, aims to explore applications in the life sciences that can be ported to the GPU architecture. A GPU hackathon is a five-day … event that offers participating teams the opportunity to either jumpstart acceleration or optimize their code on …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … from past genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs within … the subgenomes we came up with a simple series of events leading from multiple small wild strawberry species to the …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces … is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular movement, each of these … her colleagues define as “any form of functional enrichment leading to the sequencing of genomes from either individual …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the … to advance computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity … characterizing Ca. Thiomargarita magnifica has paved the way for multiple new research questions. Among them, is the … it does chemosynthesis, which is a process analogous to photosynthesis for plants.” Another outstanding question is …
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Workforce Development & Education Outreach
… with the Berkeley Lab A-LIFT team.    Overall, our aim is to inspire students and established professionals to explore opportunities in STEM by providing hands-on … Institute (SRI) at UC Berkeley is a program designed to foster a profound understanding of research methodologies …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, Posy … [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree Yao. … poplars with optimized lignin, engineering heat-resilient algae for industrial applications, and developing RNA …
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