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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … such as, “who is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All three  Brachypodium  grasses have …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … proteins with massively parallel computations.”  Guided by JGI scientists, the team embarked on a mission to unveil the …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic …
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code … are expected to be familiar with this policy. Our aim in hosting an event is to build a stronger community. Our …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … our planet encode these functions in their genomes, and the JGI is uniquely positioned to combine sequencing, DNA …
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