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Kjiersten Fagnan
… As a postdoc, her research focused on stable and accurate computational methods for reacting subsurface flows, … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s …
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Massie S. Ballon
… and outreach efforts, the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. … and Outreach Manager. Click to see the coverage of JGI-enabled science highlighting user research, newly …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the …
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of Pathogenicity" Workshop Steven Ahrendt presenting  … Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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MycoCosm Tutorial
… more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR …
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The Mobilome in the Mire
… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that can move …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  … at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … to living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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