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Supercharging SIP in the Fungal Hyphosphere
… successfully automated aspects of a commonly-used process for studying microbial communities, with results published … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … In addition, high-throughput SIP places samples into standardized microwell plates, allowing them to be processed …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This work was performed under the auspices of the Scientific Committee on …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… surfaces of plants and their roles in plant health and environmental processes. The Science In a recent Microbiome paper … surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional machineries. Nat Commun. …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …
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Progress Reports: 2002–2020
… pdfs of previous Progress Reports from the Joint Genome Institute.  …
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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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IMA genome-F18
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