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VEGA Symposium
… students and postdocs): $250     Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications … Karen Maxwell, University of Toronto, keynote speaker Grieg Steward, University of Hawai`i at Manoa, keynote speaker Joshua Weitz, University of Maryland, keynote …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome encoded more proteins …
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An Earth Month Look at Sustainability Efforts at the JGI
… detect problems with freezers storing precious samples. Another shift that happened when the JGI was still located in … rather than under desk trash bins . These encourage everyone to sort all waste into compost, recycling and trash. … say, ‘you know, we want to try this. We want to get this done’,there is support, and there is the energy, and frankly …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in the biotechnology innovation ecosystem. “At JGI, we’ve done the synthesis, metagenome mining, all the way from … conditions. However, their experiments also highlighted another component, an accessory protein called MarS. MarS …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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JGI-UC Merced Interns Share Their 2021 Experiences
… JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Pan-genome Graphs: Approaches for Complete Categorization of …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on … microbes can colonize plant roots, focusing on genetic components required for effective colonization. In addition, Dr. …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … a team studying microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … but currently require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., presence of … is not part of the standard analysis pipeline but can be done on request by the PI. We currently use the ‘Base …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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JGIota: Looking Back at Sequencing for Soybeans
… fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, … in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … Genomic Science Workshop Agenda: 6:20 PM Overview and Joint Genome Institute Plant Program Update 6:33 PM Comparative …
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