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JGI Announces 2026 New Investigator Portfolio
… Gonzalez Henao, Yang Hai, Julia G. Harenčár, Sarah Hu; [Row 3]: Lisa Kappel, Gayan Kariyawasam; Ákos T. Kovács. Elina … these researchers will harness capabilities including metagenomics, metatranscriptomics and genome assembly to …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … genomic variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six … in the nearby Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer …
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Refining the Process of Identifying Algae Biotechnology Candidates
… simulated summer in Arizona. Scenedesmus  sp. NREL 46B-D3, which thrives both in saltwater and wastewater, was … Efficiency and Renewable Energy (EERE) under Agreements NL0032355 and NL0032266. This work was also completed in part by …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …
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Jeremy Schmutz
… Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, … science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides scientific project …
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Streamlining Regulon Identification in Bacteria
… sets associated with functions like stress responses and cellular differentiation. The tough part is identifying the … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were … Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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Kjiersten Fagnan
… Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., … enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. …
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Yasuo Yoshikuni
… of citramalate., Metabolic Engineering Communications , 2023 Wu et al. Structural characterization of a soil viral … - a functional chitosanase., Nature Communications , 2023 Zhao and Yoshikuni, Discovering untapped biochemistry in … metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the …
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Evolution of a Fungal Gene Expression Regulator
… and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is often found in transposable … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of … Advanced Computing Resource Center (GACRC) and Georgia Genomics and Bioinformatics Core (GGBC) at the University of …
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Ben Bowen
… 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab … NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular … W., Lee, D., & others (2011). Conserved features of cancer cells define their sensitivity to HAMLET-induced death; …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …
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