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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative … Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Romy Chakraborty, Dawn Chiniquy, Anne Glaesener, Steven Hallam, Marc Hanikenne, Cheryl Kerfeld, Jeffrey Marlow;  …   A total of 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, technology, and … award recognized the release of MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … that precisely maps where transcription begins on the genome. This revealed a sweeping cellular response: The …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the … technology, engineering, and mathematics (STEM) workforce. In doing so, it is our ambition to further develop a …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established … from academia, industry, and government organizations for three days of scientific presentation, interactive panel … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to bring students to the JGI for research training experience. Enabled by the DOE RENEW … and I’ll be attending Alabama A&M University this fall for my master’s in plant soil science and my career focus is …
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A User-Centered Approach to Accessing JGI Data
… the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. Eventually, he added, the Genome Portal will be retired once the same features are …
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JGI Hosts GPU Hackathon in May
… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … are diverse and porting these codes to GPUs present unique challenges for the community. JGI is partnering with NVIDIA …
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JGI Announces 2026 New Investigator Portfolio
… Jake Nash, Reuben J. Peters, Morito Sakuma; [Bottom row]: Haley M. Sapers, Nadia Shakoor, Rebecca Sherbo, Jennifer E. … find a list of researchers whose proposals were accepted for 2026. With the JGI's resources, these researchers will … including metagenomics, metatranscriptomics and genome assembly to investigate microbial and plant …
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VEGA Symposium
… – $300 Students & Postdocs – $250   Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications … of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA symposium represents a unique opportunity for students and researchers in the viral ecogenomics field …
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