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Exploring the Diversity of the American Prairie’s Switchgrass
… American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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Extracting the Secrets of Secondary Metabolites
… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … as a baseline, we can allow a user to collect all of the ‘protein FASTA files’ more easily.” He also elaborated on the … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                   General attendees: $500    … $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular … are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to promote diversity and inclusion in science and research, two undergraduate students from … Alvarez, both California Alliance for Minority Participation (CAMP) students at UC Merced. CAMP is a statewide …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley … – $300 Students & Postdocs – $250   Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place November 18-19, 2026 on …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology discoveries. (Pictured … Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a … as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific target … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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JGI Early Career Researchers Featured in mSystems Special Issue
… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … different environments. He’s been involved in several plant genome projects through the Community Science Program. As a …
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