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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate intern): Currently …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call 2018, …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental …
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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