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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances … the 2014 Eucalyptus grandis reference genome that has been widely adopted. The new genome assembly resolves both …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … sequence for a line of sorghum, reference genomes have generated insight into drought tolerance, biomass production … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi
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Predicting phage–host specificity
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A roadmap for equitable reuse of public microbiome data
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse …
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JGI Scientists Pen Genome Watch Articles
… Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program … and domestication of yeast , a model eukaryote. The wide array of topics comes from the authors’ interests, says …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … and characterizing entire microbial genomes from sequences generated from environmental samples. The work aligns with … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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