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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … The Sorghum bicolor pangenome resource on Phytozome …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Additionally, the team was able to identify a major locus (Bru1) that durable resistance to brown rust disease …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an interactive browser that allows …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 … history, from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Download plant, algal, fungal and microbial genomes and …
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Igor Grigoriev
… Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of …
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Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research … Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Initiative. She conducted her postdoctoral training in human microbiome research at the Institute for Genome …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … This work was supported by the U.S. Department of Energy, Office of …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises … and experimental approaches to study genome regulation in human and other vertebrate genomes. When he joined the JGI, … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … component of a genome sequence, accounting for 45% of the human genome and 50-80% of certain plant genomes including … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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