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Picking Up Threads of Cotton Genomics
… around the world whose livelihoods depend on cotton production, and the crop’s annual economic impact of $500 … the fabric of our lives. In the United States, cotton production centers around two varieties: 95 percent of what is … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) has now …
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JGI Accepts 17 Proposals for Community Science Program
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They were … to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the Boyce Thompson Institute at … identifying the algal regulators that could boost lipid production. In their approved proposal, Frederick Colwell of …
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JGI Announces 2023 Community Science Program Awardees
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “We’re very … the DOE mission, and we look forward to facilitating their success. “ The CSP Annual Call is focused on large-scale … Research (BER) missions in: sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… on plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. … Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 … bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these … the world. These tools give researchers a way to access much more information about fungi in these environments. “Now …
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You Can Move, But You Can’t Hide
… a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory (Berkeley Lab), with computing … can affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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Tanja Woyke Elected to American Academy of Microbiology
… issues in microbiology.  A senior scientist at Lawrence Berkeley National Laboratory (Berkeley Lab), Woyke has led … relationships and leading to the discovery of features such as a new genetic code. More recently reported in Nature , she led a team that reconstructed more than 2,000 genomes of large and giant viruses …
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2024 Progress Report
… the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … an increased number of users with a record output of products, making data easier to access and use, and by investing … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community …
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Crysten Blaby-Haas
… a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in Microbiology and Cell … From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service … Science, University of Florida NIH Postdoctoral Researcher, UCLA … Handling Editor, Journal Experimental Botany, 2022 – …
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Products
… based metabolomics Below is a table of standard product offerings, including a description of the product and … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of …
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Computationally Classifying Fungal Lifestyles
… major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has generated a … test, the team reported that the algorithm was over 95% successful at classifying the fungal genomes Support Vector …
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