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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH … order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a … a single molecule of mRNA – in two species of green algae, Chlamydomonas reinhardtii and Chromochloris zofingiensis . … Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director … human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to …
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