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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your … automatically assembled and run through your annotation pipeline then added to PhycoCosm (if relevant)? A:  For …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to apply for … will be competitive. Q:  Can you elaborate on the single-cell genomics capabilities? A:  EMSL’s capabilities include …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … of bacteria 5,000 times the average size. Woyke’s  Single Cells Group helped better-understand what the …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for … in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid hybrid of two … This work was supported by the Department of Energy (DOE) Office of …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … drought tolerance, biomass production and more — however, a single reference genome shows only one slice of the … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders
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