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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. … at Colorado State University have many questions about the microbial communities deep underground, and before the …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … psychrophila can thrive in changing conditions. A recent study shows that when salinity is reduced in its … increased nutrient uptake and decreased cell death.  Scientists then extracted RNA to analyze gene expression, to …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … often hiding their function from even the most determined scientist.  Recent work in  Nature Communications takes on … scientist at the JGI and Molecular Foundry, and the study’s senior author. In other proteins, two histidine …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … UCSD Undergraduate Scholarship, 2003 and 2004 UCSD Study Abroad Scholarship (James Cook University, Australia), …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking down … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … Communication Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior scientist, about the project. The story is reposted here in …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying … Computational Biology Program, along with JGI Computational Scientist Simon Prochnik, Arthur Grossman of the Carnegie …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support … he worked on computational and experimental approaches to study genome regulation in human and other vertebrate … genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on projects to …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell …
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