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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … from even the most determined scientist.  Recent work in  Nature Communications takes on the challenge of … — but the experts we were able to work with on this project to ask questions about structure and function,” …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code … of Experimental Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … should indicate this in the proposal so we can select the project provisionally. If your project makes it successfully …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … co-opted into symbiotic functions. Recently published in  Nature Communications , the work was led by a consortium of … of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … ecological and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum …
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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by Victoria … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and … complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication Manager Sarah …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have … forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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