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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability … data, open to all researchers. Book a session via the appointment calendar for technical help, feedback or a guided …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … doing in the Guadeloupean mangroves where it was found. The study was featured on the  New York Times 2022 List of … . He and  Tringe were also involved in a study that applied metagenomic capabilities to  studying phytoplankton …
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
… Adapting the graduate research experience amidst a global …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His … (LIMS) system. He previously led the NGS Software team and metagenomic data platform at Zymergen, a synthetic biology … D., Serber, Z., Shock, J., Sneddon, M., and Yang, X. Metagenomic library and natural product discovery platform. …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products … she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … root-associated microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more … and DBI-2047598 to K.A. We thank the Department of Energy Joint Genome Institute (Community Science Program award 339, …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of … about the general review process or get details on the internal synthetic biology review process .  … JGI’s sample requirements . Samples that are not available in a timely manner will delay processing, while samples that …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … much less those considered large and giant. In a recent study  published in the journal  Nature , a team led by … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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