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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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You Can Move, But You Can’t Hide
Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … network approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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Green Algae Reveal One mRNA Encodes Many Proteins
Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the JGI and EMSL.  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Tanja Woyke Elected to American Academy of Microbiology
… the University of California, Merced. Woyke received a 2014 Berkeley Lab Director’s Award for Exceptional Scientific … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied …
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Ancient Algae Reveal Secrets of Plant Evolution
Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … “The big surprise of the project was to realize that these genome copies that are spread throughout the whole cell are …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … effort was to decode the complex Phytophthora ramorum genome. The JGI generated the organism’s DNA code in tandem … the SODmap Mobile app enabled SOD Blitz participants to geotag specimens they collect. Later, those are annotated with …
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Cataloging the Microbes that Manage the Health of River Systems
Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols … and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by …
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Busting the Unbreakable Lignin
… with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic … Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … project was supported by a grant from Santa Barbara Cottage Hospital and the University of California, Santa … Graduate Research Fellowship Program under Grant No. 1650114, a UCSB Graduate Division Dissertation Fellowship, and the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full …
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