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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the … Mentor: Zhong Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product … video below to see what some of the interns had to say about their time at the lab. …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   … of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these … often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of …
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)
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High-Quality Draft Genome Sequence of Fischerella thermalis JSC-11, a Siderophilic Cyanobacterium with Bioremediation Potential
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A Sorghum Pangenome Opens More Doors to Discovery
… from a much broader view than ever before. With this information, researchers can link genetic variation more … how we think of things that we thought we knew everything about,” said Lovell.  In future work, a pangenome offers … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … described a novel technique to access high-quality genomic information using minute quantities of DNA derived from … biology, a team studying microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … scores of nurseries across the nation, elevating concerns about the pathogen to an all-time high. California …
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JGI announces 2025 Functional Genomics awardees
… [ Pictured from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi … genomics research from scientists who translate genomic information into biological function. Through our  CSP … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions …
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HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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