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… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree or … Q(uestion): Can you please explain again how did you pick genomes to be on the genomes portal? For the taxa I work on, …

… (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …

… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … and genome version you’re after.  You can even grab genomes based on which version of Phytozome (e.g., 9, 10, …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …

… sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …

… move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …

… eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …

… for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … Metagenomic discovery of biomass-degrading genes and genomes from cow rumen . Science 331, 463-7. Visel A , Zhu …

… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed … of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides … scientific project management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the …

… Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …