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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … the roles played by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI … needed Users are notified as projects reach specific milestones, either by automated emails or emails from your Project …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … ). “We have made a concerted effort to create a common set of ‘baseline metadata’ across the files that are submitted …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… conducting early field studies related to her thesis on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial …   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … yet still thrives. The Impact This discovery creates a powerful platform for producing specialty oils, chemical …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis … the University of California, Davis. “The work with JGI was one of the first things we actually started doing when … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … above all else, determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship … program and current PhD student, reached this milestone with a recent publication in Molecular Biology and …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … and researchers to harness the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds … and more — however, a single reference genome shows only one slice of the adaptation possible for this plant. In …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and … (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent molecule when bound to a …
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Synthesis
… to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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