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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … be the first publicly available, river-focused microbial resource that provides information at multiple scales from …
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness … the fungi were making. So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen and …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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Introducing New Members of the JGI User Executive Committee
… of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the full … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … for three additional positions on the UEC. Thirty-four JGI users were nominated, representing a breadth of …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the …
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