Search

… is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …

… Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … Phytozome v13 has been accessible to users since 2019.  We have attempted to make sure users will continue to …

… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … technologies have led to an abundance of microbial genomes becoming available to the global research … , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution in a pan-genomic context. … manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, rapid generation …

… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR could … the doors to characterizing how DGRs work at the molecular level. Scientists might then harness them as molecular tools …

… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …

… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … how fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the … as reliable markers for classifying species and studying diversity in complex biological systems. By making the tools …

… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … very excited to start working with this years’ crop of CSP recipients, over half of which are first-time PIs on a … “The proposed research by these PIs will address a broad diversity of important scientific questions relevant to the …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are …

… specific environmental conditions — like temperature, pH levels or the availability of certain nutrients — influence … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture …

… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in … sequencing methods to characterize gene regulation at the level of individual cells across diverse plant tissues. Dr. …