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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … learn more about the project, HudsonAlpha’s Research Communication Manager Sarah Sharman recently interviewed study … are JGI Flagship Plants, mostly related to biofuels and feedstocks. And then we expanded that to include six more …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … reported on the development and validation of a dereplication, aggregation and scoring tool (DAS Tool). To validate … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Enhancing microRNA167A expression in seed decreases the α‐linolenic acid content and increases seed size in Camelina sativa
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus … are still working on finalizing the tree and related publication the tree is still in development and not available …
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Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree or … genome with itself, to identify regions that might be duplicated? A: Yes, we do routinely calculate self-alignments, …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked to conditions such as … the human genome. They wanted to learn about the genes implicated in the development of breast and prostate cancer, and …
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How to Submit Sequencing Samples
… demonstrate the importance of proper nucleic acid quantification in our Illumina and PacBio sequencing workflows and … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? … United States must also include a completed Export Certification Form . 2) Obtain Approval for Shipping Before …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National Laboratory (Berkeley …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Laboratory, have … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups …
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JGI@25: From Life at the Extremes to Editing Genomes
… DNA. Such proteins have been adapted for therapeutic application development by Mammoth Biosciences, one of several … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … and metabolism through reconstruction of microbial genomes from the environment . Nature. 2004. 428, 37–43 …
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Decoding Yellowstone’s Microbial Mats
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