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A Collaboration to Improve Plant Genome Annotations Across Species
… – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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Team Science Reveals Important Protein in Poplar
… and cell wall structure in the poplar plants with help from scientists at the NSLS-II.  These findings lay the … From our partners …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US … Lab), embarked on a pilot project with biology students from Boca Raton Community High School in Palm Beach County, … the proper permits, to the refuge to collect soil samples from multiple locations. Back in the classroom, JGI …
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The JGI Data Portal: Improving User Experience
… JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… is led by a team of highly experienced investigators from institutions including the University of Maryland and … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse metagenomics samples. …
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Tracking the Origins of Methane-Producing Microbes
… user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … collected. The team noticed some of the genomes diverged evolutionarily from other previously discovered genomes. …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … Summary The 27 samples studied by researchers came from two environments: natural forests and plantations … From our partners …
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Nikos Kyrpides
… et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … ASM’s USFCC/J. Roger Porter Award (2018) Honorary Doctorate from the Aristotle University of Thessaloniki (2017) The van …
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An Earth Month Look at Sustainability Efforts at the JGI
… And so we’re looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program … Reaching that goal will mean slashing direct emissions from energy, natural gas and electricity, as well as … and performing services,” Fulton said. These emissions come from the whole lifecycle of materials used — from their …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … team reported the first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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New Research Sheds Light on Diversity in the Deep Sea
… and other microorganisms that live there.  Researchers from Portland State University and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how these …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging … this symbiosis could improve the way soils store carbon from the atmosphere. For plants, boosting this relationship … spatial transcriptomics data captured molecular information from both plant cells and fungal cells. “Because this …
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