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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new … striving for sustainability in lab spaces as well as offices. These efforts dovetail into sustainability … looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program manager for  …
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JGI announces first round of 2023 New Investigator awardees
… is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel … under our Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … cell’s membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a … Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference …
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JGI Announces 2025 New Investigator Portfolio
… You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work aligns with DOE missions .  Below …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … Pelagophyceae, a microalga shown to thrive in both nutrient-rich and nutrient-poor conditions. It lives in a range of … Berkeley National Laboratory (Berkeley Lab). In their analysis, they found the salinity changes led the algae to …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  Environmental … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … the processes happening on and in forest soil also better enriches models of global carbon and nitrogen cycling, both on … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo …
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