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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … can adapt to future environmental conditions. Additionally, insights from the genome could help scale sustainable … effects of breeding practices that transformed sugarcane into production factories for sugar and biomass. …
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Soil virus offers insight into maintaining microorganisms
… data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … chitosanases originated in bacteria before being modified into virus-specific versions through genetic drift and … X-rays.  This study only begins to unearth the insights to be found within soil viruses and AMGs. It could …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Analysis of the genetic diversity of the soybean rust pathogen Phakopsora pachyrhizi reveals two major evolutionary lineages
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  Citrus genus, which gives us … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative …
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Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based …   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … (9203). RJC was supported for his work on  Auxenochlorella genome sequencing and assembly in Berkeley, in part, through …
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