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… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …

Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … hudsonalpha.org. … Reference genome of Setaria viridis … Datasets …

Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …

JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …

… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … The team used all the publicly available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & …

… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …

… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled …

PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  … of Health (NIH).  … View the Dataset on IMG/M data portal … Datasets …

Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, and …

Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …