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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the … added structure and process to the group by developing SOPs for instrument maintenance and operation.   Pursuing an … he worked with the Informatics Department to develop software that pushed instrument run information directly …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … many statistical tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free tool … (CRD), in order to create more useful tools for the bioinformatics community. Other work presented at the …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial …
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Mapping the Earth’s Hidden Fungal Kingdom
… in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … and Algal Science Program and JGI users have been at the forefront of tackling this enormous challenge, assembling … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Leo Baumgart
… biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic technologies, integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint … address some of the most pressing challenges of our time. For more information, please visit  …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI …
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Natural Prodcast Episode 6: Marc Chevrette
… Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his PhD. Warp Drive was a … to be able to share a few more stories from there as we go forward. And Marc’s quickly built up a great body of work, …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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