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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …
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Natural Prodcast Episode 2: The Primer, Part 2
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … – drawn by Selman Waxman, who was a microbiologist who was working on these things in the very early 1900s.  DAN: And … to your cell wall, then the antibiotic, you know, doesn’t affect it anymore. And so all of those antibiotics …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address … Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  …
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … of algal biology using genomics and multi-omics by working with research labs and culture collections to … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Finding the Fermenters
… multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and … between the predicted and actual end products. … This work was supported by the United States Department of …
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UC Merced Interns Reflect on Their JGI Summer Projects
… of eight weeks this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission … and develop presentation skills as well as build their network in the field of genomics and scientific research. …
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Strain Engineering
… little to no genetic tools enabling heterologous expression and functional exploration.  The developed strains represent an … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral … biology and bioinformatics approaches in support of meeting DOE mission critical programmatic goals. … Joubert et al., …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … In 2017, the first New Lineages of Life (NeLLi) workshop was held, inviting the research community to …
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